1. Research

Publications

Oryza glumaepatula: A wild relative to improve drought tolerance in cultivated rice

Parthiban Thathapalli Prakash, Dmytro Chebotarov, Jianwei Zhang, David A. Kudrna, Rolando O. Torres, Mignon A. Natividad, Marinell R. Quintana, Jiaming Song, Carlos E. Maldonado, Sherry Lou Hechanova, Kshirod Jena, Rod A. Wing, and Amelia Henry
2023

Genome-wide association analysis identifies natural allelic variants associated with panicle architecture variation in African rice, Oryza glaberrima Steud

Fabrice Ntakirutimana, Christine Tranchant-Dubreuil, Philippe Cubry, Kapeel Chougule, Jianwei Zhang, Rod A. Wing, Hélène Adam, Mathias Lorieux, Stefan Jouannic
2023

(preprint) HPC-based genome variant calling workflow (HPC-GVCW)

Yong Zhou, Nagarajan Kathiresan, Zhichao Yu, Luis F. Rivera, Manjula Thimma, Keerthana Manickam, Dmytro Chebotarov, Ramil Mauleon, Kapeel Chougule, Sharon Wei, Tingting Gao, Carl D. Green, Andrea Zuccolo, Jianwei Zhang, Doreen Ware, Kenneth L. McNally,
Rod A Wing
2023

Multi-omics resources for targeted agronomic improvement of pigmented rice

Khalid Sedeek, Andrea Zuccolo, Alice Fornasiero, Annika M. Weber, Krishnaveni Sanikommu, Sangeetha Sampathkumar, Luis F. Rivera, Haroon Butt, Saule Mussurova, Abdulrahman Alhabsi, Nurmansyah Nurmansyah, Elizabeth P. Ryan, Rod A. Wing & Magdy M. Mahfou
2023

Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice

Yong Zhou, Zhichao Yu, Dmytro Chebotarov, Kapeel Chougule, Zhenyuan Lu, Luis F. Rivera, Nagarajan Kathiresan, Noor Al-Bader, Nahed Mohammed, Aseel Alsantely, Saule Mussurova, João Santos, Manjula Thimma, Maxim Troukhan, Alice Fornasiero, Carl D. Green,
Dario Copetti, David Kudrna, Victor Llaca, Mathias Lorieux, Andrea Zuccolo, Doreen Ware, Kenneth McNally, Jianwei Zhang & Rod A. Wing
2023

Rice Gene Index: A comprehensive pan-genome database for comparative and functional genomics of Asian rice

Zhichao Yu (于志超), Yongming Chen (陈永明), Yong Zhou (周勇), Yulu Zhang (张雨露), Mengyuan Li (李梦圆), Yidan Ouyang (欧阳亦聃), Dmytro Chebotarov, Ramil Mauleon, Hu Zhao (赵虎), Weibo Xie (谢为博), Kenneth L. McNally, Rod A. Wing, Weilong Guo (郭伟龙), Jianwei Zhang (张建伟)
2023

Prediction of crossover recombination using parental genomes

Mauricio Peñuela, Camila Riccio-Rengifo, Jorge Finke, Camilo Rocha, Anestis Gkanogiannis, Rod A. Wing, Mathias Lorieux
2023

(preprint) Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice

Zhichao Yu (于志超), Yongming Chen (陈永明), Yong Zhou (周勇), Yulu Zhang (张雨露), Mengyuan Li (李梦圆), Yidan Ouyang (欧阳亦聃), Dmytro Chebotarov, Ramil Mauleon, Hu Zhao (赵虎), Weibo Xie (谢为博), Kenneth L. McNally, Rod A. Wing, Weilong Guo (郭伟龙), Jianwei Zhang (张建伟)
2023

The International Oryza Map Alignment Project (IOMAP): The Americas - Past achievements and future directions

Aseel Alsantely, Rafal Gutaker, María E Navarrete Rodríguez, Griselda Arrieta-Espinoza, Eric J Fuchs, Antonio Costa de Oliveira, Joe Tohme, Andrea Zuccolo, Rod A Wing, Alice Fornasiero
2022

Rice domestication

Alice Fornasiero, Rod A. Wing, Pamela Ronald
2022

Starch Synthesis-Related Genes (SSRG) Evolution in the Genus Oryza

Karine E. Janner de Freitas, Railson Schreinert dos Santos, Carlos Busanello, Filipe de Carvalho Victoria, Jennifer Luz Lopes, Rod A. Wing and Antonio Costa de Oliveira
2021

A route to de novo domestication of wild allotetraploid rice

Hong Yu, Tao Lin, Xiangbing Meng, Huilong Du, Jingkun Zhang, Guifu Liu, Mingjiang Chen, Yanhui Jing, Liquan Kou, Xiuxiu Li, Qiang Gao, Yan Liang, Xiangdong Liu, Zhilan Fan, Yuntao Liang, Zhukuan Cheng, Mingsheng Chen, Zhixi Tian, Yonghong Wang,
Chengcai Chu, Jianru Zuo, Jianmin Wan, Qian Qian, Bin Han, Andrea Zuccolo, Rod A Wing, Caixia Gao, Chengzhi Liang, Jiayang Li
2021

Assembly and Validation of Two Gap-free Reference Genomes for Xian/indica Rice Reveals Insights into Plant Centromere Architecture

Jia-Ming Song, Wen-Zhao Xie, Shuo Wang, Yi-Xiong Guo, Dal-Hoe Koo, Dave Kudrna, Yicheng Huang, Jia-Wu Feng, Wenhui Zhang, Yong Zhou, Andrea Zuccolo, Evan Long, Seunghee Lee, Jayson Talag, Run Zhou, Xi-Tong Zhu, Daojun Yuan, Joshua Udall, Weibo Xie,
Rod A Wing, Qifa Zhang, Jesse Poland, Jianwei Zhang, Ling-Ling Chen
2021

The gap-free rice genomes provide insights for centromere structure and function exploration and graph-based pan-genome construction

Jia-Ming Song, Wen-Zhao Xie, Shuo Wang, Yi-Xiong Guo, Jesse Poland, Dal-Hoe Koo, Dave Kudrna, Evan Long, Yicheng Huang, Jia-Wu Feng, Wenhui Zhang, Seunghee Lee, Jayson Talag, Run Zhou, Xi-Tong Zhu, Daojun Yuan, Joshua Udall, Weibo Xie, Rod Anthony Wing,
Qifa Zhang, Jianwei Zhang, Ling-Ling Chen
2020

Potential of Platinum Standard Reference Genomes to Exploit Natural Variation in the Wild Relatives of Rice

Saule Mussurova, Noor Al-Bader, Andrea Zuccolo, Rod A Wing
2020

SSRG evolution in the genus Oryza

Freitas KEJd, Santos RSd, C Busanello, Victoria FdC, JL Lopes, RA Wing, ACD Oliveira
2020

A platinum standard pan-genome resource that represents the population structure of Asian rice

Yong Zhou, Dmytro Chebotarov, Dave Kudrna, Victor Llaca, Seunghee Lee, Shanmugam Rajasekar, Nahed Mohammed, Noor Al-Bader, Chandler Sobel-Sorenson, Praveena Parakkal, Lady Johanna Arbelaez, Natalia Franco, Nickolai Alexandrov,
N Ruaraidh Sackville Hamilton, Hei Leung, Ramil Mauleon, Mathias Lorieux, Andrea Zuccolo, Kenneth McNally, Jianwei Zhang, Rod A Wing
2020

Evolution and Diversity of the Wild Rice Oryza officinalis Complex, across Continents, Genome Types, and Ploidy Levels

Matt Shenton, Masaaki Kobayashi, Shin Terashima, Hajime Ohyanagi, Dario Copetti, Tania Hernández-Hernández, Jianwei Zhang, Nobuko Ohmido, Masahiro Fujita, Atsushi Toyoda, Hiroshi Ikawa, Asao Fujiyama, Hiroyasu Furuumi, Toshie Miyabayashi, Takahiko Kubo,
David Kudrna, Rod Wing, Kentaro Yano, Ken-Ichi Nonomura, Yutaka Sato, Nori Kurata
2020

Mass genome sequencing of crops and wild relatives to accelerate crop breeding: the digital rice genebank

KL McNally, RP Mauleon, D Chebotarov, SP Klassen, A Kohli, G Ye, H Leung, RS Hamilton, RA Wing
2020

Oryza genome diversity: discovery, management and utilisation

Rod A Wing
2019