(preprint) HPC-based genome variant calling workflow (HPC-GVCW)
Authors
bioRxiv 2023.06.25.546420
This article is a preprint and has not been certified by peer review [what does this mean?].
| Preprinted: | June 26, 2023 |
Abstract
A high-performance computing genome variant calling workflow was designed to run GATK on HPC platforms. This workflow efficiently called an average of 27.3 M, 32.6 M, 168.9 M, and 16.2 M SNPs for rice, sorghum, maize, and soybean, respectively, on the most recently released high-quality reference sequences. Analysis of a rice pan-genome reference panel revealed 2.1 M novel SNPs that have yet to be publicly released.
Competing Interest Statement
The authors have declared no competing interest.
Additional Information
Date of publication:
2023