Publications

Evolution of plant genome architecture

Jonathan F. Wendel, Scott A. Jackson, Blake C. Meyers and Rod A. Wing

Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species

Kyunghee Kim, Sang-Choon Lee, Junki Lee, Yeisoo Yu, Kiwoung Yang, Beom-Soon Choi, Hee-Jong Koh, Nomar Espinosa Waminal, Hong-Il Choi, Nam-Hoon Kim, Woojong Jang, Hyun-Seung Park, Jonghoon Lee, Hyun Oh Lee, Ho Jun Joh, Hyeon Ju Lee, Jee Young Park

Sampath Perumal, Murukarthick Jayakodi, Yun Sun Lee, Backki Kim, Dario Copetti, Soonok Kim, Sunggil Kim, Ki-Byung Lim, Young-Dong Kim, Jungho Lee, Kwang-Su Cho, Beom-Seok Park, Rod A. Wing & Tae-Jin Yang

Genome and comparative transcriptomics of African wild rice Oryza longistaminata provide insights into molecular mechanism of rhizomatousness and self-incompatibility

Yesheng Zhang, Shilai Zhang, Hui Liu, Binying Fu, Lijuan Li, Min Xie, Yue Song, Xin Li, Jing Cai, Wenting Wan, Ling Kui, Hui Huang, Jun Lyu, Yang Dong, Wensheng Wang, Liyu Huang, Jing Zhang, Qinzhong Yang, Qinli Shan, Qiong Li, Wangqi Huang

Dayun Tao, Muhua Wang, Mingsheng Chen, Yeisoo Yu, Rod A. Wing, Wen Wang, Fengyi Hu

Harvesting rice's dispensable genome

Sequencing of 15,622 gene-bearing BACs clarifies the gene-dense regions of the barley genome

María Muñoz-Amatriaín 1,†, Stefano Lonardi 2,†, MingCheng Luo 3, Kavitha Madishetty 1, Jan T Svensson 1,4, Matthew J Moscou 1,5, Steve Wanamaker 1, Tao Jiang 2, Andris Kleinhofs 6, Gary J Muehlbauer 7, Roger P Wise 8, Nils Stein 9, Yaqin Ma 1,3

Edmundo Rodriguez 1,29, Dave Kudrna 10, Prasanna R Bhat 1,11, Shiaoman Chao 12, Pascal Condamine 1, Shane Heinen 7, Josh Resnik 1, Rod Wing 10, Heather N Witt 3, Matthew Alpert 2, Marco Beccuti 2,13, Serdar Bozdag 2,14, Francesca Cordero 2,13

Hamid Mirebrahim 2, Rachid Ounit 2, Yonghui Wu 2, Frank You 15, Jie Zheng 2,16, Hana Šimková 17, Jaroslav Doležel 17, Jane Grimwood 18, Jeremy Schmutz 18, Denisa Duma 2, Lothar Altschmied 9, Tom Blake 19, Phil Bregitzer 20, Laurel Cooper 21

Muharrem Dilbirligi 6,22, Anders Falk 23, Leila Feiz 19,24, Andreas Graner 9, Perry Gustafson 25, Patrick M Hayes 21, Peggy Lemaux 26, Jafar Mammadov 27,28 and Timothy J Close 1,*

RiTE database: a resource database for genus-wide rice genomics and evolutionary biology

Dario Copetti, Jianwei Zhang, Moaine El Baidouri, Dongying Gao, Jun Wang, Elena Barghini, Rosa M. Cossu, Angelina Angelova, Carlos E. Maldonado L., Stefan Roffler, Hajime Ohyanagi, Thomas Wicker, Chuanzhu Fan, Andrea Zuccolo, Mingsheng Chen

Antonio Costa de Oliveira, Bin Han, Robert Henry, Yue-ie Hsing, Nori Kurata, Wen Wang, Scott A. Jackson, Olivier Panaud and Rod A. Wing

Transposons play an important role in the evolution and diversification of centromeres among closely related species

Dongying Gao 1, Ning Jiang 2, Rod A. Wing 3, Jiming Jiang 4 and Scott A. Jackson 1*

The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication

Muhua Wang, Yeisoo Yu, Georg Haberer, Pradeep Reddy Marri, Chuanzhu Fan, Jose Luis Goicoechea, Andrea Zuccolo, Xiang Song, Dave Kudrna, Jetty S S Ammiraju, Rosa Maria Cossu, Carlos Maldonado, Jinfeng Chen, Seunghee Lee, Nick Sisneros, Kristi de Baynast

Wolfgang Golser, Marina Wissotski, Woojin Kim, Paul Sanchez, Marie-Noelle Ndjiondjop, Kayode Sanni, Manyuan Long, Judith Carney, Olivier Panaud, Thomas Wicker, Carlos A Machado, Mingsheng Chen, Klaus F X Mayer, Steve Rounsley & Rod A Wing

A reference genome for common bean and genome-wide analysis of dual domestications

Jeremy Schmutz Phillip E McClean Sujan Mamidi G Albert Wu Steven B Cannon Jane Grimwood Jerry Jenkins Shengqiang Shu Qijian Song Carolina Chavarro Mirayda Torres-Torres Valerie Geffroy Samira Mafi Moghaddam Dongying Gao Brian Abernathy Kerrie Barry

Matthew Blair Mark A Brick Mansi Chovatia Paul Gepts David M Goodstein Michael Gonzales Uffe Hellsten David L Hyten Gaofeng Jia James D Kelly Dave Kudrna Rian Lee Manon M S Richard Phillip N Miklas Juan M Osorno Josiane Rodrigues Vincent Thareau

Carlos A Urrea Mei Wang Yeisoo Yu Ming Zhang Rod A Wing Perry B Cregan Daniel S Rokhsar Scott A Jackson

Fluorescence in situ hybridization and optical mapping to correct scaffold arrangement in the tomato genome

Lindsay A. Shearer, Lorinda K. Anderson, Hans de Jong, Sandra Smit, José Luis Goicoechea, Bruce A. Roe, Axin Hua, James J. Giovannoni, and Stephen M. Stack

Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies

Pan Y, Deng Y, Lin H, Kudrna DA, Wing RA, Li L, Zhang Q, Luo M.

Disentangling Methodological and Biological Sources of Gene Tree Discordance on Oryza (Poaceae) Chromosome 3

Derrick J. Zwickl 1,5, Joshua C. Stein 2, Rod A. Wing 3, Doreen Ware 2,4 and Michael J. Sanderson 1

Genome-wide Prediction of Highly Specific Guide RNA Spacers for the CRISPR-Cas9 Mediated Genome Editing in Model Plants and Major Crops

Kabin Xie (a), Jianwei Zhang (b,c) and Yinong Yang (a,d)

Global Genomic Diversity of Oryza sativa Varieties Revealed by Comparative Physical Mapping

Xiaoming Wang, David A. Kudrna, Yonglong Pan, Hao Wang, Lin Liu, Haiyan Lin, Jianwei Zhang, Xiang Song, Jose Luis Goicoechea, Rod A. Wing, Qifa Zhang and Meizhong Luo

Assembly and Validation of the Genome of the Nonmodel Basal Angiosperm Amborella

Srikar Chamala, Andre S. Chanderbali, Joshua P. Der, Tianying Lan, Brandon Walts, Victor A. Albert, Claude W. dePamphilis, Jim Leebens-Mack, Steve Rounsley, Stephan C. Schuster, Rod A. Wing, Nianqing Xiao, Richard Moore, Pamela S. Soltis

Douglas E. Soltis, W. Brad Barbazuk

The Amborella Genome and the Evolution of Flowering Plants

Amborella Genome Project

15 MYA of evolution in the Oryza genus shows extensive gene family expansion

Julie Jacquemin 1, Jetty S.S. Ammiraju 1, Georg Haberer 2, Dean D. Billheimer 3, Yeisoo Yu 1, Liana C. Liu 1, Luis F. Rivera 1, Klaus Mayer 2, Mingsheng Chen 4 and Rod A. Wing 1,5

Genomic Resources for Gene Discovery, Functional Genome Annotation, and Evolutionary Studies of Maize and Its Close Relatives

Chao Wang, Xue Shi, Lin Liu, Haiyan Li, Jetty S.S. Ammiraju, David A. Kudrna, Wentao Xiong, Hao Wang, Zhaozhao Dai, Yonglian Zheng, Jinsheng Lai, Weiwei Jin, Joachim Messing, Jeffrey L. Bennetzen, Rod A. Wing and Meizhong Luo

Making a living while starving in the dark: metagenomic insights into the energy dynamics of a carbonate cave

Marianyoly Ortiz 1, Antje Legatzki 1, Julia W Neilson 1, Brandon Fryslie 2, William M Nelson 3, Rod A Wing 4, Carol A Soderlund 3, Barry M Pryor 4 and Raina M Maier 1

[BOOK]Genetics and Genomics of Rice

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