1. Research

Publications

Gapless assembly of maize chromosomes using long-read technologies

Jianing Liu, Arun S Seetharam, Kapeel Chougule, Shujun Ou, Kyle W Swentowsky, Jonathan I Gent, Victor Llaca, Margaret R Woodhouse, Nancy Manchanda, Gernot G Presting, David A Kudrna, Magdy Alabady, Candice N Hirsch, Kevin A Fengler, Doreen Ware,
Todd P Michael, Matthew B Hufford, R Kelly Dawe
2020

A willow sex chromosome reveals convergent evolution of complex palindromic repeats

Ran Zhou, David Macaya-Sanz, Craig H Carlson, Jeremy Schmutz, Jerry W Jenkins, David Kudrna, Aditi Sharma, Laura Sandor, Shengqiang Shu, Kerrie Barry, Gerald A Tuskan, Tao Ma, Jianquan Liu, Matthew Olson, Lawrence B Smart, Stephen P DiFazio
2020

Highly accurate long-read HiFi sequencing data for five complex genomes

Ting Hon, Kristin Mars, Greg Young, Yu-Chih Tsai, Joseph W Karalius, Jane M Landolin, Nicholas Maurer, David Kudrna, Michael A Hardigan, Cynthia C Steiner, Steven J Knapp, Doreen Ware, Beth Shapiro, Paul Peluso, David R Rank
2020

The gap-free rice genomes provide insights for centromere structure and function exploration and graph-based pan-genome construction

Jia-Ming Song, Wen-Zhao Xie, Shuo Wang, Yi-Xiong Guo, Jesse Poland, Dal-Hoe Koo, Dave Kudrna, Evan Long, Yicheng Huang, Jia-Wu Feng, Wenhui Zhang, Seunghee Lee, Jayson Talag, Run Zhou, Xi-Tong Zhu, Daojun Yuan, Joshua Udall, Weibo Xie, Rod Anthony Wing,
Qifa Zhang, Jianwei Zhang, Ling-Ling Chen
2020

A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

Brigitte T Hofmeister, Johanna Denkena, Maria Colomé-Tatché, Yadollah Shahryary, Rashmi Hazarika, Jane Grimwood, Sujan Mamidi, Jerry Jenkins, Paul P Grabowski, Avinash Sreedasyam, Shengqiang Shu, Kerrie Barry, Kathleen Lail, Catherine Adam, Anna Lipzen,
Rotem Sorek, Dave Kudrna, Jayson Talag, Rod Wing, David W Hall, Daniel Jacobsen, Gerald A Tuskan, Jeremy Schmutz, Frank Johannes, Robert J Schmitz
2020

Evolution and diversification of reproductive phased small interfering RNAs in Oryza species

Peng Tian, Xuemei Zhang, Rui Xia, Yang Liu, Meijiao Wang, Bo Li, Tieyan Liu, Jinfeng Shi, Rod A Wing, Blake C Meyers, Mingsheng Chen
2020

Potential of Platinum Standard Reference Genomes to Exploit Natural Variation in the Wild Relatives of Rice

Saule Mussurova, Noor Al-Bader, Andrea Zuccolo, Rod A Wing
2020

Platinum-grade soybean reference genome facilitates characterization of genetic underpinnings of traits

Xinxin Yi, Jing Liu, Shengcai Chen, Hao Wu, Min Liu, Qing Xu, Lingshan Lei, Seunghee Lee, Bao Zhang, Dave Kudrna, Wei Fan, Rod Wing, Chunyan Yang, Mengchen Zhang, Jianwei Zhang, Xuelu Wang, Nansheng Chen
2020

Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)

Guangyi Fan, Yue Song, Liandong Yang, Xiaoyun Huang, Suyu Zhang, Mengqi Zhang, Xianwei Yang, Yue Chang, He Zhang, Yongxin Li, Shanshan Liu, Lili Yu, Jeffery Chu, Inge Seim, Chenguang Feng, Thomas J Near, Rod A Wing, Wen Wang, Kun Wang, Jing Wang, Xun Xu,
Huanming Yang, Xin Liu, Nansheng Chen, Shunping He
2020

SSRG evolution in the genus Oryza

Freitas KEJd, Santos RSd, C Busanello, Victoria FdC, JL Lopes, RA Wing, ACD Oliveira
2020

Evolutionary Dynamics of Abundant 7-bp Satellites in the Genome of Drosophila virilis

Jullien M Flynn, Manyuan Long, Rod A Wing, Andrew G Clark
2020

A platinum standard pan-genome resource that represents the population structure of Asian rice

Yong Zhou, Dmytro Chebotarov, Dave Kudrna, Victor Llaca, Seunghee Lee, Shanmugam Rajasekar, Nahed Mohammed, Noor Al-Bader, Chandler Sobel-Sorenson, Praveena Parakkal, Lady Johanna Arbelaez, Natalia Franco, Nickolai Alexandrov,
N Ruaraidh Sackville Hamilton, Hei Leung, Ramil Mauleon, Mathias Lorieux, Andrea Zuccolo, Kenneth McNally, Jianwei Zhang, Rod A Wing
2020

Evolution and Diversity of the Wild Rice Oryza officinalis Complex, across Continents, Genome Types, and Ploidy Levels

Matt Shenton, Masaaki Kobayashi, Shin Terashima, Hajime Ohyanagi, Dario Copetti, Tania Hernández-Hernández, Jianwei Zhang, Nobuko Ohmido, Masahiro Fujita, Atsushi Toyoda, Hiroshi Ikawa, Asao Fujiyama, Hiroyasu Furuumi, Toshie Miyabayashi, Takahiko Kubo,
David Kudrna, Rod Wing, Kentaro Yano, Ken-Ichi Nonomura, Yutaka Sato, Nori Kurata
2020

Mass genome sequencing of crops and wild relatives to accelerate crop breeding: the digital rice genebank

KL McNally, RP Mauleon, D Chebotarov, SP Klassen, A Kohli, G Ye, H Leung, RS Hamilton, RA Wing
2020

Fish10K Pilot Project Data

Guangyi Fan, Yue Song, Liandong Yang, Xiaoyun Huang, Suyu Zhang, Mengqi Zhang, Xianwei Yang, Yue Chang, He Zhang, Yongxin Li, Shanshan Liu, Lili Yu, Jeffery Chu, Inge Seim, Chenguang Feng, Thomas J Near, Rod Anthony Wing, Wen Wang, Kun Wang, Jing Wang,
Xun Xu, Huanming Yang, Xin Liu, Nansheng Chen, Shunping He
2020

Mitochondrial plastid DNA can cause DNA barcoding paradox in plants

Hyun-Seung Park, Murukarthick Jayakodi, Sae Hyun Lee, Jae-Hyeon Jeon, Hyun-Oh Lee, Jee Young Park, Byeong Cheol Moon, Chang-Kug Kim, Rod A Wing, Steven G Newmaster, Ji Yeon Kim, Tae-Jin Yang
2020

Integrating a newly developed BAC-based physical mapping resource for Lolium perenne with a genome-wide association study across a L. perenne European ecotype collection identifies genomic contexts associated with agriculturally important traits

John Harper, J De Vega, Suresh Swain, D Heavens, Dagmara Gasior, Ann Thomas, Caron Evans, Alan Lovatt, Sue Lister, Danny Thorogood, L Skøt, Matthew Hegarty, Tina Blackmore, Dave Kudrna, S Byrne, T Asp, Wayne Powell, Narcis Fernandez-Fuentes, Ian Armstead
2019

Genome-wide association mapping of date palm fruit traits

Khaled M Hazzouri, Muriel Gros-Balthazard, Jonathan M Flowers, Dario Copetti, Alain Lemansour, Marc Lebrun, Khaled Masmoudi, Sylvie Ferrand, Michael I Dhar, Zoë A Fresquez, Ulises Rosas, Jianwei Zhang, Jayson Talag, Seunghee Lee, David Kudrna,
Robyn F Powell, Ilia J Leitch, Robert R Krueger, Rod A Wing, Khaled MA Amiri, Michael D Purugganan
2019

Oryza genome diversity: discovery, management and utilisation

Rod A Wing
2019

Genome sequence of the model rice variety KitaakeX

Rashmi Jain, Jerry Jenkins, Shengqiang Shu, Mawsheng Chern, Joel A Martin, Dario Copetti, Phat Q Duong, Nikki T Pham, David A Kudrna, Jayson Talag, Wendy S Schackwitz, Anna M Lipzen, David Dilworth, Diane Bauer, Jane Grimwood, Catherine R Nelson,
Feng Xing, Weibo Xie, Kerrie W Barry, Rod A Wing, Jeremy Schmutz, Guotian Li, Pamela C Ronald
2019