Publications

Genome sequence of the model rice variety KitaakeX

Rashmi Jain, Jerry Jenkins, Shengqiang Shu, Mawsheng Chern, Joel A Martin, Dario Copetti, Phat Q Duong, Nikki T Pham, David A Kudrna, Jayson Talag, Wendy S Schackwitz, Anna M Lipzen, David Dilworth, Diane Bauer, Jane Grimwood, Catherine R Nelson,

Feng Xing, Weibo Xie, Kerrie W Barry, Rod A Wing, Jeremy Schmutz, Guotian Li, Pamela C Ronald

2019

Functional screening of genes from a halophyte wild rice relative Porteresia coarctata in Arabidopsis model identifies candidate genes involved in salt tolerance

Venkata R Mangu, Disna Ratnasekera, Jonalyn C Yabes, Rod A Wing, Niranjan Baisakh

2019

The Genomics of Oryza Species Provides Insights into Rice Domestication and Heterosis

Erwang Chen, Xuehui Huang, Zhixi Tian, Rod A Wing, Bin Han

2019

Progress in single-access information systems for wheat and rice crop improvement

Armin Scheben, Chon-Kit Kenneth Chan, Locedie Mansueto, Ramil Mauleon, Pierre Larmande, Nickolai Alexandrov, Rod A Wing, Kenneth L McNally, Hadi Quesneville, David Edwards

2019

Towards the Completion of a Set of Platinum Standard Reference Genome Sequences (PSRefSeqs) that bridge the Genetic Diversity of Cultivated Rice & its Wild Relatives

Rod A Wing

2019

Structural variants in 3000 rice genomes

Roven Rommel Fuentes, Dmytro Chebotarov, Jorge Duitama, Sean Smith, Juan Fernando De la Hoz, Marghoob Mohiyuddin, Rod A Wing, Kenneth L McNally, Tatiana Tatarinova, Andrey Grigoriev, Ramil Mauleon, Nickolai Alexandrov

2019

Twelve Platinum-Standard Reference Genomes Sequences (PSRefSeq) that complete the full range of genetic diversity of Asian rice

Yong Zhou, Dmytro Chebotarov, Dave Kudrna, Victor Llaca, Seunghee Lee, Shanmugam Rajasekar, Nahed Mohammed, Noor Al-Bader, Chandler Sobel-Sorenson, Praveena Parakkal, Lady Johanna Arbelaez, Natalia Franco, Nickolai Alexandrov,

N Ruaraidh Sackville Hamilton, Hei Leung, Ramil Mauleon, Mathias Lorieux, Andrea Zuccolo, Kenneth McNally, Jianwei Zhang, Rod A Wing

2019

Machine Learning Reveals Spatiotemporal Genome Evolution in Asian Rice Domestication

Hajime Ohyanagi, Kosuke Goto, Sónia Negrão, Rod A Wing, Mark A Tester, Kenneth L McNally, Vladimir B Bajic, Katsuhiko Mineta, Takashi Gojobori

2019

Genetic control of seed shattering during African rice domestication

Shuwei Lv, Wenguang Wu, Muhua Wang, Rachel S Meyer, Marie-Noelle Ndjiondjop, Lubin Tan, Haiying Zhou, Jianwei Zhang, Yongcai Fu, Hongwei Cai, Chuanqing Sun, Rod A Wing, Zuofeng Zhu

2018

Genome Sequencing and Comparative Analysis of the Early Flowering Rice Variety Kitaake

Rashmi Jain, Guotian Li, Jerry Jenkins, Shengqiang Shu, Dario Copetti, David Kudrna, Mawsheng Chern, Nhan T Pham, Tong Wei, Joel Martin, Phat Duong, Wendy Schackwitz, Anna Lipzen, Eda Karaagac, Randy Ruan, Kerrie W Barry, Rod Wing, Jeremy Schmutz,

Pamela Ronald

2018

The international rice informatics consortium bioinformatics resources

Ramil P Mauleon, Kenneth L McNally, Locedie Mansueto, Dmytro Chebotarov, Lord Hendrix Barboza, Venice Juanillas, Pierre Larmande, Gaëtan Droc, Manuel Ruiz, Alexis Dereeper, N Ruaraidh Sackville Hamilton, Nickolai Alexandrov, Hei Leung, Rod A Wing

2018

Genotyping by sequencing of rice interspecific backcross inbred lines identifies QTLs for grain weight and grain length

Dharminder Bhatia, Rod A Wing, Yeisoo Yu, Kapeel Chougule, Dave Kudrna, Seunghee Lee, Allah Rang, Kuldeep Singh

2018

Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

Joshua C. Stein, Yeisoo Yu, Dario Copetti, Derrick J. Zwickl, Li Zhang, Chengjun Zhang, Kapeel Chougule, Dongying Gao, Aiko Iwata, Jose Luis Goicoechea, Sharon Wei, Jun Wang, Yi Liao, Muhua Wang, Julie Jacquemin, Claude Becker, Dave Kudrna,

Jianwei Zhang, Carlos E. M. Londono, Xiang Song, Seunghee Lee, Paul Sanchez, Andrea Zuccolo, Jetty S. S. Ammiraju, Jayson Talag, Ann Danowitz, Luis F. Rivera, Andrea R. Gschwend, Christos Noutsos, Cheng-chieh Wu, Shu-min Kao, Jhih-wun Zeng, Fu-jin Wei,

Qiang Zhao, Qi Feng, Moaine El Baidouri, Marie-Christine Carpentier, Eric Lasserre, Richard Cooke, Daniel da Rosa Farias, Luciano Carlos da Maia, Railson S. dos Santos, Kevin G. Nyberg, Kenneth L. McNally, Ramil Mauleon, Nickolai Alexandrov,

Jeremy Schmutz, Dave Flowers, Chuanzhu Fan, Detlef Weigel, Kshirod K. Jena, Thomas Wicker, Mingsheng Chen, Bin Han, Robert Henry, Yue-ie C. Hsing, Nori Kurata, Antonio Costa de Oliveira, Olivier Panaud, Scott A. Jackson, Carlos A. Machado,

Michael J. Sanderson, Manyuan Long, Doreen Ware & Rod A. Wing

2018

The rice genome revolution: from an ancient grain to Green Super Rice

Rod A. Wing, Michael D. Purugganan & Qifa Zhang

2018

Genomic variation in 3,010 diverse accessions of Asian cultivated rice

Wensheng Wang, Ramil Mauleon, Zhiqiang Hu, Dmytro Chebotarov, Shuaishuai Tai, Zhichao Wu, Min Li, Tianqing Zheng, Roven Rommel Fuentes, Fan Zhang, Locedie Mansueto, Dario Copetti, Millicent Sanciangco, Kevin Christian Palis, Jianlong Xu, Chen Sun

Binying Fu, Hongliang Zhang, Yongming Gao, Xiuqin Zhao, Fei Shen, Xiao Cui, Hong Yu, Zichao Li, Miaolin Chen, Jeffrey Detras, Yongli Zhou, Xinyuan Zhang, Yue Zhao, Dave Kudrna, Chunchao Wang, Rui Li, Ben Jia, Jinyuan Lu, Xianchang He, Zhaotong Dong

Jiabao Xu, Yanhong Li, Miao Wang, Jianxin Shi, Jing Li, Dabing Zhang, Seunghee Lee, Wushu Hu, Alexander Poliakov, Inna Dubchak, Victor Jun Ulat, Frances Nikki Borja, John Robert Mendoza, Jauhar Ali, Jing Li, Qiang Gao, Yongchao Niu, Zhen Yue

Ma. Elizabeth B. Naredo, Jayson Talag, Xueqiang Wang, Jinjie Li, Xiaodong Fang, Ye Yin, Jean-Christophe Glaszmann, Jianwei Zhang, Jiayang Li, Ruaraidh Sackville Hamilton, Rod A. Wing, Jue Ruan, Gengyun Zhang, Chaochun Wei, Nickolai Alexandrov

Kenneth L. McNally, Zhikang Li & Hei Leung

2018

Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice

Marta Brozynska, Dario Copetti, Agnelo Furtado, Rod A. Wing, Darren Crayn, Glen Fox, Ryuji Ishikawa, Robert J. Henry

2017

A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication

Wenguang Wu, Xiaoyun Liu, Muhua Wang, Rachel S. Meyer, Xiaojin Luo, Marie-Noelle Ndjiondjop, Lubin Tan, Jianwei Zhang, Jianzhong Wu, Hongwei Cai, Chuanqing Sun, Xiangkun Wang, Rod A. Wing & Zuofeng Zhu

2017